Data Access Form

Dataset Title:	SOOS - Antarctic genomic sequences from environmental samples
Institution:	European Nucleotide Archive (Dataset ID: ENA_SEQUENCES)
Information:	Summary \| License \| FGDC \| ISO 19115 \| Metadata \| Background \| Make a graph

To work correctly, this web page requires that JavaScript be enabled in your browser. Please:
1) Enable JavaScript in your browser:
      • Chrome: "Settings : Advanced : Privacy and security : Site Settings : JavaScript"
      • Firefox: (it should be always on!)"
      • Opera: "Settings : Websites : JavaScript"
      • Safari: "Safari : Preferences : Security : Enable JavaScript"
2) Reload this web page.

Variable	Minimum	Maximum
accession	""	""
sample_accession	"SAMD00000008"	"SAMN35005129"
time (Collection Date, UTC)	1710-01-01	2262-01-01

country	"Afghanistan"	"Zimbabwe:Victoria ..."
tax_id	"10"	"999947"
scientific_name	"ANME-2 cluster arc..."	"zooplankton metage..."
secondary_sample_accession	"DRS012292"	"SRS9999757"
Unnamed_10 (Unnamed: 10)	""	""
latitude (degrees_north)	-7377608.054957	1.3E9

longitude (degrees_east)	-1.2072952096044E7	6.2001459999999E15

Url	"https://www.ebi.ac..."	"https://www.ebi.ac..."

Server-side Functions

distinct()

Hover here to see a list of options. Click on an option to select it.

File type: (more information)

(Documentation / Bypass this form )

(Please be patient. It may take a while to get the data.)

The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  accession {
    String long_name "Accession";
  }
  sample_accession {
    String long_name "Sample Accession";
  }
  time {
    String _CoordinateAxisType "Time";
    Float64 actual_range -8.2048032e+9, 9.2146464e+9;
    String axis "T";
    String ioos_category "Time";
    String long_name "Collection Date";
    String source_name "collection_date";
    String standard_name "time";
    String time_origin "01-JAN-1970 00:00:00";
    String time_precision "1970-01-01";
    String units "seconds since 1970-01-01T00:00:00Z";
  }
  country {
    String long_name "Country";
  }
  tax_id {
    String long_name "Tax Id";
  }
  scientific_name {
    String long_name "Scientific Name";
  }
  secondary_sample_accession {
    String long_name "Secondary Sample Accession";
  }
  Unnamed_10 {
    String long_name "Unnamed: 10";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float64 actual_range -7377608.054957, 1.3e+9;
    String axis "Y";
    Float64 colorBarMaximum 90.0;
    Float64 colorBarMinimum -90.0;
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float64 actual_range -1.2072952096044e+7, 6.2001459999999e+15;
    String axis "X";
    Float64 colorBarMaximum 180.0;
    Float64 colorBarMinimum -180.0;
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Url {
    String long_name "Url";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_name "ENA";
    String creator_type "institution";
    Float64 Easternmost_Easting 6.2001459999999e+15;
    Float64 geospatial_lat_max 1.3e+9;
    Float64 geospatial_lat_min -7377608.054957;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max 6.2001459999999e+15;
    Float64 geospatial_lon_min -1.2072952096044e+7;
    String geospatial_lon_units "degrees_east";
    String history 
"2024-11-21T10:28:36Z (local files)
2024-11-21T10:28:36Z https://erddap.sochic-h2020.eu/erddap/tabledap/ENA_SEQUENCES.html";
    String infoUrl "https://www.ebi.ac.uk/about";
    String institution "European Nucleotide Archive";
    String keywords "accession, antarctic, collection, collection_date, country, data, date, ena, environmental, genomic, langitude, latitude, name, project, project_name, sample, samples, scientific, scientific_name, secondary, secondary_sample_accession, sequences, soos, soos-antarctic, tax, tax_id, Url";
    String license "CCBY 4.0";
    Float64 Northernmost_Northing 1.3e+9;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing -7377608.054957;
    String standard_name_vocabulary "CF Standard Name Table v55";
    String summary "ENA Antarctic genomic sequences from environmental samples";
    String time_coverage_end "2262-01-01";
    String time_coverage_start "1710-01-01";
    String title "SOOS - Antarctic genomic sequences from environmental samples";
    Float64 Westernmost_Easting -1.2072952096044e+7;
  }
}

Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link)

Data Access Protocol (DAP) (external link)

and its selection constraints (external link)

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

(easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
(easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
(not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

ERDDAP, Version 2.24
Disclaimers | Privacy Policy | Contact