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Dataset Title:  EMBL European Bioinformatics Institute - Environmental Nucleotide Sequencing
Data
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Institution:  EMBL   (Dataset ID: EMBL_environmental_data)
Information:  Summary ? | License ? | FGDC | ISO 19115 | Metadata | Background (external link) | Files | Make a graph
 
Variable ?   Optional
Constraint #1 ?
Optional
Constraint #2 ?
   Minimum ?
 
   Maximum ?
 
 id ?          "AAWO01000000"    "Z77649"
 references ?          "https://www.ebi.ac..."    "https://www.ebi.ac..."
 basisOfRecord ?          "MaterialSample"    "PreservedSpecimen"
 occurrenceID ?          "AAWO01000000"    "Z77649"
 catalogNumber ?          "#A12-903"    "yang5133"
 recordedBy ?          "A. Abramov"    "yu zhang"
 sex ?          "male"    "male (based on gen..."
 occurrenceRemarks ?          "'Candidatus Kapaba..."    "uncultured stramen..."
 associatedSequences ?          "https://www.ebi.ac..."    "https://www.ebi.ac..."
 eventDate ?          "01-AUG-2004"    "Sep-2020"
 country ?          "Algeria"    "West Bank"
 locality ?          "'Beowulf Spring', ..."    "wetland close to C..."
 minimumElevationInMeters ?          -3283.0    5800.0
 maximumElevationInMeters ?          -3283.0    5800.0
 latitude (degrees_north) ?          -90.0    83.09
  < slider >
 longitude (degrees_east) ?          -180.0    180.0
  < slider >
 identifiedBy ?          "A Zuljevic"    "zahir shadick"
 taxonID ?          "ASV:00007670c23e5c..."    "ASV:ffffffb455e291..."
 taxonConceptID ?          "https://www.ebi.ac..."    "https://www.ebi.ac..."
 scientificName ?          "'Candidatus Kapaba..."    "zooplankton enviro..."
 kingdom ?          "Bamfordvirae"    "Viridiplantae"
 phylum ?          "Abditibacteriota"    "candidate division..."
 class ?          "Abditibacteriia"    "Zygnemophyceae"
 order ?          "Abditibacteriales"    "unclassified Bacte..."
 family ?          "Abditibacteriaceae"    "Zymomonadaceae"
 genus ?          "Abditibacterium"    "Zymoseptoria"
 
Server-side Functions ?
 distinct() ?
? ("Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.")

File type: (more information)

(Documentation / Bypass this form ? )
 
(Please be patient. It may take a while to get the data.)


 

The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  id {
    String ioos_category "Identifier";
    String long_name "Id";
  }
  references {
    String ioos_category "Unknown";
    String long_name "References";
  }
  basisOfRecord {
    String ioos_category "Unknown";
    String long_name "Basis Of Record";
  }
  occurrenceID {
    String ioos_category "Identifier";
    String long_name "Occurrence ID";
  }
  catalogNumber {
    String ioos_category "Statistics";
    String long_name "Catalog Number";
  }
  recordedBy {
    String ioos_category "Unknown";
    String long_name "Recorded By";
  }
  sex {
    String ioos_category "Biology";
    String long_name "Sex";
  }
  occurrenceRemarks {
    String ioos_category "Unknown";
    String long_name "Occurrence Remarks";
  }
  associatedSequences {
    String ioos_category "Unknown";
    String long_name "Associated Sequences";
  }
  eventDate {
    String ioos_category "Time";
    String long_name "Event Date";
  }
  country {
    String ioos_category "Location";
    String long_name "Country";
  }
  locality {
    String ioos_category "Location";
    String long_name "Locality";
  }
  minimumElevationInMeters {
    Float32 _FillValue NaN;
    Float32 actual_range -3283.0, 5800.0;
    String ioos_category "Location";
    String long_name "Minimum Elevation In Meters";
  }
  maximumElevationInMeters {
    Float32 _FillValue NaN;
    Float32 actual_range -3283.0, 5800.0;
    String ioos_category "Location";
    String long_name "Maximum Elevation In Meters";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float64 _FillValue NaN;
    Float64 actual_range -90.0, 83.09;
    String axis "Y";
    Float64 colorBarMaximum 90.0;
    Float64 colorBarMinimum -90.0;
    String ioos_category "Location";
    String long_name "Latitude";
    String source_name "decimalLatitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float64 _FillValue NaN;
    Float64 actual_range -180.0, 180.0;
    String axis "X";
    Float64 colorBarMaximum 180.0;
    Float64 colorBarMinimum -180.0;
    String ioos_category "Location";
    String long_name "Longitude";
    String source_name "decimalLongitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  identifiedBy {
    String ioos_category "Unknown";
    String long_name "Identified By";
  }
  taxonID {
    String ioos_category "Identifier";
    String long_name "Taxon ID";
  }
  taxonConceptID {
    String ioos_category "Identifier";
    String long_name "Taxon Concept ID";
  }
  scientificName {
    String ioos_category "Taxonomy";
    String long_name "Scientific Name";
  }
  kingdom {
    String ioos_category "Unknown";
    String long_name "Kingdom";
  }
  phylum {
    String ioos_category "Taxonomy";
    String long_name "Phylum";
  }
  class {
    String ioos_category "Unknown";
    String long_name "Class";
  }
  order {
    String ioos_category "Taxonomy";
    String long_name "Order";
  }
  family {
    String ioos_category "Taxonomy";
    String long_name "Family";
  }
  genus {
    String ioos_category "Taxonomy";
    String long_name "Genus";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.10, ACDD-1.3";
    Float64 Easternmost_Easting 180.0;
    Float64 geospatial_lat_max 83.09;
    Float64 geospatial_lat_min -90.0;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max 180.0;
    Float64 geospatial_lon_min -180.0;
    String geospatial_lon_units "degrees_east";
    String history 
"2024-12-22T21:10:48Z (local files)
2024-12-22T21:10:48Z https://erddap.sochic-h2020.eu/erddap/tabledap/EMBL_environmental_data.html";
    String infoUrl "https://www.ebi.ac.uk/ena/browser/api/embl/Z77378";
    String institution "EMBL";
    String keywords "array, array-data, associated, associatedSequences, basis, basisOfRecord, biology, catalogNumber, class, comprehensive, concept, country, data, date, elevation, event, eventDate, family, genus, identified, identifiedBy, identifier, kingdom, large, latitude, local, locality, longitude, maximum, maximumElevationInMeters, meters, minimum, minimumElevationInMeters, name, number, occurrence, occurrenceID, occurrenceRemarks, order, phylum, record, recorded, recordedBy, references, remarks, scientific, scientificName, sequences, sex, source, statistics, stewardship, system, taxon, taxonConceptID, taxonID, taxonomy, time";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 83.09;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing -90.0;
    String standard_name_vocabulary "CF Standard Name Table v70";
    String summary "EMBL European Bioinformatics Institute - Environmental Nucleotide Sequencing Data";
    String title "EMBL European Bioinformatics Institute - Environmental Nucleotide Sequencing Data";
    Float64 Westernmost_Easting -180.0;
  }
}

 

Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link) Data Access Protocol (DAP) (external link) and its selection constraints (external link).

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.


 
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